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Species belonging to selected taxon:

Elaeis guineensis



ABOUT THIS RECORD

ID: MNEST000560
species: Elaeis guineensis
miRNA family: MIRf1372
source: miRNEST

Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCGAGCTTCTCGAAGATGTC

miRNA*
GCTTCGCAAGCTCGCCGG

mismatches: 5
bulges: 1

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pre-miRNA
TCCGAGACAGCGTGCTTCGCAAGCTCGCCGGGAAGGACGAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATTGTAGGCTTCTTATTGTAGCGGGCAA
GCTTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAG


dot-bracket secondary structure
.......(((((..(((((.(((((((((((((.....((..(((((....)))))..))))))(((((((.....((((((((((........))).))
)))))...))))))).)))))))))..)))))....)))))......



SIMILARITIES
miRBase no hits

PMRD osa-miRf10132-akr: 3e-36

microPC no hits
UniProt sp|Q9SI96|H2B3_ARATH: 4e-19

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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